PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085227.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 909aa    MW: 100413 Da    PI: 6.7136
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085227.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.4e-24127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d+++++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_011085227.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHNNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217
                     99*****************************8544444..48************************************************..888 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_011085227.1 218 KNQLLLGIRRA 228
                     9999***9986 PP
2Auxin_resp116.52.3e-38253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaast+s F+++YnPras+seFv++++k+++a++ ++vs+GmRf+m fete+ss rr++Gt++g+ dldp rWpnS+Wrs+k
  XP_011085227.1 253 AAHAASTNSRFTIFYNPRASPSEFVISLAKFVRAVYhTRVSIGMRFRMLFETEESSVRRYMGTITGICDLDPARWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-21126227No hitNo description
PfamPF023623.0E-22127228IPR003340B3 DNA binding domain
SMARTSM010191.2E-23127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478127229IPR003340B3 DNA binding domain
PfamPF065072.9E-33253336IPR010525Auxin response factor
PfamPF023092.7E-8765860IPR033389AUX/IAA domain
SuperFamilySSF542776.47E-8766849No hitNo description
PROSITE profilePS5174524.737774858IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MKLSAGMDQQ SPEGEKSCLN SELWHACAGP LVSLPAIGSH VVYFPQGHSE QVAASTNKEV  60
DGQIPNYPSV SPQLICQLHN VTMHADIETD EVYAQMTLQP LSPQEQKEVF FLPADLGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHNNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRAAR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAASTN SRFTIFYNPR ASPSEFVISL AKFVRAVYHT RVSIGMRFRM  300
LFETEESSVR RYMGTITGIC DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPIYPSPFS LRLKRPWPPG LPSFSGMKND EMGLNSPFMW LRGGVEDLGT QSLNFQGMGM  420
TPWMQPRLDN SVLGMQNDVY QAIAAAALHE MRVAQPPKQI LSSMMQFQQP QALGSMPAGF  480
IQPQVLQSSQ SPAPLLQSLS GNQSQAPSQL HPNFLQQKVH HQNSFNNIQL PQQQHQQQQS  540
TLLHQQHHVT DHPLQASTVA PILSRLSTNS QEQSESLQPI SSMHQNFSEP ILKPMAANTS  600
APLHGLLGPA HQDEASKLLS MPRSSNLLSS SGWPTKRVAL DPLLSDCVSQ GNSTQLNHLG  660
SSNTNVTQNA VSLPPFPGRE CLIEQEGSND PQNHFLFGVN IDSSSLLMQN GMSNLKGVGS  720
DCDNAAIAFG SSSYMSSPVA DYSLKTTVTS SNGIDESGFL RSSENVGHEN PSNRTFVKVY  780
KSGSFGRSLD ITKFSSYHEL RSELAQMFGL EGQLEDPLRS GWQLVFVDRE NDVLLLGDDP  840
WQEFVNSVWC IKILSPQEVQ EMGKQRLEIL TSVPVQRPPL PNGTSDGYVS RQEARNINAG  900
IPSVGTLDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1571535747388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085227.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085227.10.0auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2G9HYM10.0A0A2G9HYM1_9LAMI; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]