PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085262.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 235aa    MW: 26381.7 Da    PI: 5.9077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085262.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12e-051852211354
                     HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R+r+++    Lr ++P a      ++s +++L +Av+Y+ksL
  XP_011085262.1 185 RQRMRKMVKALRGIVPGA-----NRMSTVAVLDEAVRYLKSL 221
                     79999999*********8.....69***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.915172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-6179227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.53E-7181226No hitNo description
Gene3DG3DSA:4.10.280.104.4E-7183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-9183231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MHSDQPYFPR KPMLPLCDQV GYYMQNPPMA SAFNGFVPPG VKPLMPFSNV DIQPSDACPR  60
NFIIFDQTNN RSQIMFHPEI NSKFFCPGLG VDTSMLRDNV EQKDSNDERK VASSSKEDSD  120
DIDALLSTEY EENEECDDDE VSTARTGAVY ECNSPDSCSN YESPSKKSRP FVRKSSGSRG  180
SEKKRQRMRK MVKALRGIVP GANRMSTVAV LDEAVRYLKS LRVEVQKLEV GNSKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188KRQRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085262.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085262.11e-175transcription factor bHLH144
RefseqXP_011085263.11e-175transcription factor bHLH144
RefseqXP_011085264.11e-175transcription factor bHLH144
TrEMBLA0A2G9I1G31e-113A0A2G9I1G3_9LAMI; Uncharacterized protein
STRINGMigut.H01376.1.p3e-94(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81241924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.21e-32bHLH family protein