PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085309.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28058.6 Da    PI: 9.6733
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085309.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_011085309.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
                    79***********************************************8 PP
2K-box111.11.2e-36951896100
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + s++ea+++++qqe++kL+++i+nLq++++++lGe+L+ L+l+eL++Le+++e++++kiRskKnell+++ie++qk+e +l+++n+ Lr+k++e
  XP_011085309.1  95 SGSVSEANTQYYQQEASKLRAQISNLQNQNKNMLGESLGALTLRELKNLETRVERGISKIRSKKNELLYAEIEYMQKREIDLHHNNHFLRAKIAE 189
                     33499***************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-411776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.3751777IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-331890IPR002100Transcription factor, MADS-box
CDDcd002657.49E-461892No hitNo description
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-331939IPR002100Transcription factor, MADS-box
PfamPF003199.0E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-335475IPR002100Transcription factor, MADS-box
PfamPF014862.6E-25101187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.525103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEFPSDQTRE MSSERKTGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSVKA TIERYKKATS DSPNSGSVSE ANTQYYQQEA SKLRAQISNL  120
QNQNKNMLGE SLGALTLREL KNLETRVERG ISKIRSKKNE LLYAEIEYMQ KREIDLHHNN  180
HFLRAKIAET ERGQQHMSLM PGNSEYHELV QSQPFDSRDY LQVSGLQTHN GYPRQDQPPL  240
QLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A1e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B1e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C1e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D1e-201885168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P1e-201885269Myocyte-specific enhancer factor 2B
1tqe_Q1e-201885269Myocyte-specific enhancer factor 2B
1tqe_R1e-201885269Myocyte-specific enhancer factor 2B
1tqe_S1e-201885269Myocyte-specific enhancer factor 2B
6c9l_A1e-201885269Myocyte-specific enhancer factor 2B
6c9l_B1e-201885269Myocyte-specific enhancer factor 2B
6c9l_C1e-201885269Myocyte-specific enhancer factor 2B
6c9l_D1e-201885269Myocyte-specific enhancer factor 2B
6c9l_E1e-201885269Myocyte-specific enhancer factor 2B
6c9l_F1e-201885269Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085309.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085309.10.0floral homeotic protein AGAMOUS-like isoform X4
SwissprotQ408851e-144AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A0R6FU881e-151A0A0R6FU88_CATSE; AGAMOUS-like protein
STRINGMigut.M00986.1.p1e-142(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-119MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]