PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085424.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CO-like
Protein Properties Length: 410aa    MW: 44535.6 Da    PI: 4.8394
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085424.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.1e-06544639
        zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    C+ ++e++ + +C+++   lC +C  + H+       H++
  XP_011085424.1  5 CDFCGEQRSIVYCRSDAASLCLSCDRNVHSAnalsrrHSR 44
                    *****************************65677777765 PP
2zf-B_box223.4e-074687439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     +C++++++++   C + +  lC++C   +H g      H++
  XP_011085424.1 46 LVCERCNSQPAFVRCIEERISLCPNCDWVGHAGsnvspaHKR 87
                    68*****************************88778888876 PP
3CCT63.37.4e-22353396144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R  a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ 
  XP_011085424.1 353 RSDAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 396
                     889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.655147IPR000315B-box-type zinc finger
CDDcd000211.83E-6447No hitNo description
SMARTSM003362.3E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.5174384IPR000315B-box-type zinc finger
CDDcd000210.0014783No hitNo description
PfamPF062031.9E-16353395IPR010402CCT domain
PROSITE profilePS5101715.368353395IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGYLCDFCGE QRSIVYCRSD AASLCLSCDR NVHSANALSR RHSRTLVCER CNSQPAFVRC  60
IEERISLCPN CDWVGHAGSN VSPAHKRQAV NCYSGCPSAA ELSAIWSFLL DLPSVGDSTC  120
EQGMGSMSIS DNKPRDCQGS QGKNNTQDAS FLVEDSDLNN MDVNKATVCI ESCTSLDPKL  180
QNADQLAGSS NSVMPKVFLP GEKGPVECED DGFYDEFNMD EVDLSIENYE ELFGVAHNPE  240
DLFDNDGIDG LFGLKDMSGS DCHGAYPEGS SVGGMKMQPA CSNAASADSV VSCKTEPNLC  300
FTRQAHSSLS FSGLNGETSA ADYQDCGVSS IVIMGEPPWG PPGPESSIPP SSRSDAVMRY  360
KEKKKTRKFE KKVRYASRKA RADVRRRVKG RFVKAGDAYD YDPLSQSRSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085424.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085424.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_020551824.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_020551825.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-137COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2G9HSC70.0A0A2G9HSC7_9LAMI; Uncharacterized protein
STRINGMigut.M00064.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-109CONSTANS-like 9