PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011085506.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 584aa MW: 66842.2 Da PI: 4.6198

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011085506.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.4	9.8e-38	4	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk lrrkC++dCv+a+yfpa++p+kf vhk++Ga nv kllk+l +++r++a++slvyeAe r+rdPv+G+vg++ lqq+l+q++++l XP_011085506.1 4 PCAACKCLRRKCTNDCVFARYFPADNPSKFTSVHKVYGACNVAKLLKELgTDSQRNEAVKSLVYEAEYRLRDPVHGCVGHVALLQQKLRQVQHDL 98 7**********************************************77778*************************************** PP DUF260 95 allkee 100 + +k+e XP_011085506.1 99 ECAKKE 104 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.642	3	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.2E-37	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MLPPCAACKC LRRKCTNDCV FARYFPADNP SKFTSVHKVY GACNVAKLLK ELGTDSQRNE 60 AVKSLVYEAE YRLRDPVHGC VGHVALLQQK LRQVQHDLEC AKKELSTYIA PSEMLPQQQP 120 QQNFLPSVYQ MMPSHVQQMM IPTGVPLPHR GQLVIREPNL QEQQHQQKQI LEAQQLVAMA 180 AAMEQETLRS YQQQQLQQLQ EQEVLRAYEQ QLLQQLQEQE VLRADEQQQL QHQQQLQQQQ 240 GHDLVRFNNV FDDGAGPSTA TGFNEMPEEA AAMEQEMLRA YEQQQLQQLQ EQEVLRADEQ 300 QQLQQLQEQE VLRADEQQQL QYQQQLQHQQ QLQQQQGHDL VRFNNVFDDG AGPSTATGFN 360 EMPEKAAAME QEMLRAYEQQ QLQHLQQQQE QELLRAYAQQ LQQQTEHDLV RFSTNVFDDG 420 AGPSTATGFN EMPEEAAAME QEMLRAYEQQ LQQQAAHDLV RLSSNVFDDG AGPSTATGFN 480 EMPEEAAAKA DGMQPFMSLG GSYETNPYHH IQHHNLVQEQ SFSPSHPHTD HPNQLQLVAT 540 EELFLQQQEQ QRRDVTSHNH LQQTEQQLAS STPGLAVPPA IPER

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MLPPCAACKC LRRKCTNDCV FARYFPADNP SKFTSVHKVY GACNVAKLLK ELGTDSQRNE  60
AVKSLVYEAE YRLRDPVHGC VGHVALLQQK LRQVQHDLEC AKKELSTYIA PSEMLPQQQP  120
QQNFLPSVYQ MMPSHVQQMM IPTGVPLPHR GQLVIREPNL QEQQHQQKQI LEAQQLVAMA  180
AAMEQETLRS YQQQQLQQLQ EQEVLRAYEQ QLLQQLQEQE VLRADEQQQL QHQQQLQQQQ  240
GHDLVRFNNV FDDGAGPSTA TGFNEMPEEA AAMEQEMLRA YEQQQLQQLQ EQEVLRADEQ  300
QQLQQLQEQE VLRADEQQQL QYQQQLQHQQ QLQQQQGHDL VRFNNVFDDG AGPSTATGFN  360
EMPEKAAAME QEMLRAYEQQ QLQHLQQQQE QELLRAYAQQ LQQQTEHDLV RFSTNVFDDG  420
AGPSTATGFN EMPEEAAAME QEMLRAYEQQ LQQQAAHDLV RLSSNVFDDG AGPSTATGFN  480
EMPEEAAAKA DGMQPFMSLG GSYETNPYHH IQHHNLVQEQ SFSPSHPHTD HPNQLQLVAT  540
EELFLQQQEQ QRRDVTSHNH LQQTEQQLAS STPGLAVPPA IPER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-32	4	108	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-32	4	108	11	114	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011085506.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020551532.1	0.0	putative mediator of RNA polymerase II transcription subunit 26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	3e-47	ASYMMETRIC LEAVES 2-like 1