PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085568.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CO-like
Protein Properties Length: 354aa    MW: 38970.4 Da    PI: 6.4146
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.12.3e-052360637
        zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    C+++ +     +C++   +lC +C + +H +      H
  XP_011085568.1 23 CDTCRSAASAVYCRTHLAYLCTSCDTRIHADnhlsprH 60
                    ******99********************9666444555 PP
2zf-B_box27.75.7e-0963108342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      ++C+ +e+ ++ l C+ ++  lC  C   +H+       H +vp+
  XP_011085568.1  63 VWVCEACESSPAALICKADSASLCSACDADIHSAnplarrHHRVPI 108
                     689*****************************66899999877775 PP
3CCT69.77.6e-24284327144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_011085568.1 284 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRS 327
                     9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.6E-41865IPR000315B-box-type zinc finger
CDDcd000212.15E-52365No hitNo description
PROSITE profilePS501199.0582365IPR000315B-box-type zinc finger
PROSITE profilePS5011911.14961108IPR000315B-box-type zinc finger
PfamPF006434.4E-762108IPR000315B-box-type zinc finger
CDDcd000216.22E-964108No hitNo description
SMARTSM003368.7E-966108IPR000315B-box-type zinc finger
PfamPF062037.6E-18284326IPR010402CCT domain
PROSITE profilePS5101716.638284326IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MLKLQNSPMK HGGAARSTWP RGCDTCRSAA SAVYCRTHLA YLCTSCDTRI HADNHLSPRH  60
ERVWVCEACE SSPAALICKA DSASLCSACD ADIHSANPLA RRHHRVPILP IPGTLYGPSA  120
ANADGVIVRR SMDEEAEDED EDEAASWLLY NPTIKNGDED QSNDDNGRAS FGGEADEYLA  180
LDYYNSCQNN QFNNGYSINQ QQPCQSFPQR SYCSDSVVPI PPAYSYPASI SQTVALPLMD  240
HVGGVPEPAT SEVSVSQTRP PKGTIELFSG PPVQIPTQLS PTDREARVLR YREKKKNRKF  300
EKTIRYASRK AYAETRPRIK GRFAKRSGDA EAEVDQLFST SLVSESAFSV VPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085568.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085568.10.0zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-101COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2G9GS631e-155A0A2G9GS63_9LAMI; GATA-4/5/6 transcription factor
STRINGPOPTR_0017s14410.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-86CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]