PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085594.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 236aa    MW: 27534 Da    PI: 7.8142
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085594.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed+ll+++v   G g+W++++   g++R++k+c++rw +yl
   XP_011085594.1 16 KGPWTPQEDKLLIEYVGSNGEGRWSSVSISTGLNRSGKSCRLRWVNYL 63
                     79********************************************97 PP
2Myb_DNA-binding48.52e-1573113547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      T++E+ +++++++ lG++ W++Iar+++ gRt++++k++w+++
   XP_011085594.1  73 TPQEEGIIIQLHAVLGNK-WSAIARYLP-GRTDNEIKNYWRTH 113
                      9*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.5741167IPR017930Myb domain
SuperFamilySSF466892.66E-3013110IPR009057Homeodomain-like
SMARTSM007172.5E-141565IPR001005SANT/Myb domain
PfamPF002494.1E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-201770IPR009057Homeodomain-like
CDDcd001677.41E-91863No hitNo description
PROSITE profilePS5129419.36668118IPR017930Myb domain
SMARTSM007174.5E-1368116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2371117IPR009057Homeodomain-like
CDDcd001674.15E-973114No hitNo description
PfamPF002491.4E-1373113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MERWGAVCDE EKGWKKGPWT PQEDKLLIEY VGSNGEGRWS SVSISTGLNR SGKSCRLRWV  60
NYLRPGLKKS HLTPQEEGII IQLHAVLGNK WSAIARYLPG RTDNEIKNYW RTHFKKRKPN  120
CETKKEKRRI LRQKLVHREQ EQTNYSNNIH ESPQACDEIN IKKETDMGYP IVENNQFLPM  180
MYQDTEFWFD FITADSYFWD ELWGLDDVIV QNRGGTGGGC CEGDTIDYVQ RGGYMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-27311716127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085594.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085594.11e-178transcription factor WER-like
TrEMBLA0A2G9GMX47e-80A0A2G9GMX4_9LAMI; Uncharacterized protein
STRINGSolyc02g089190.1.11e-73(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-61myb domain protein 121