PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085607.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 371aa    MW: 40591.8 Da    PI: 6.3774
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085607.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.5e-31143201259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  XP_011085607.1 143 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 201
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109137203IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-31137203IPR003657WRKY domain
SuperFamilySSF1182902.09E-26140203IPR003657WRKY domain
SMARTSM007741.4E-37142202IPR003657WRKY domain
PfamPF031067.2E-26144201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MIEASDHVEN TAGFALATGA GNDNTSANLA PKLVDDEMKR PSNIFSRMLQ ISPNPKLPIP  60
PASDSQGLAP TSPRGFKAPP LLISTNHNLN DTKCCLMVES PGLQISSPRN TGIKRRKSQA  120
KKVVCIPAPT PANSRASGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCSARKQV  180
ERSRTDPNML VITYTSEHNH PWPTQRNALA GSTRSQASKN YSAAKNSPNS QAQRPKSPKE  240
EQKDISRENT VSSSGIDTNS AAVKEETDQE FDNQFEMDDT EFVEVFPPSY KPTLSDSNHT  300
EDSFFADLGE IEADPLDLLF TQGFPGDEGR ENKVLDPFSF YEWAGNNSNM TVATNTTASA  360
TTSYGESKRD S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-26117204280Disease resistance protein RRS1
5w3x_D3e-26117204280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085607.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085607.10.0probable WRKY transcription factor 14
SwissprotQ9SA804e-84WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A2G9I5D21e-174A0A2G9I5D2_9LAMI; Uncharacterized protein
STRINGXP_010036632.11e-134(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-86WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]