PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011085629.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

M-type_MADS

Protein Properties

Length: 193aa MW: 22270.9 Da PI: 9.8766

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011085629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.7	1.3e-12	15	55	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i+n+++r+v kR + + KKA+ELS+LC++++ ++i + XP_011085629.1 15 QISNETKRKVLCMKRVESLTKKASELSILCGVNIGIVIHEP 55 69**********************************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.101	6	52	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.8E-10	6	65	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.58E-19	7	99	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.33E-18	7	90	No hit	No description
PRINTS	PR00404	9.3E-5	8	28	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-13	16	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-5	28	43	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MENMYMTRKR VKHGQISNET KRKVLCMKRV ESLTKKASEL SILCGVNIGI VIHEPTENNA 60 ILWPSPEVFG DRLQKFLDFS GSERAKKMMN HEKYLHQRVH DGIEEMSKSQ YRKEFKESQL 120 LMNELLIKGK DFSAVDLVQL SCLRSLAAQM LKKLQFRNDE LNGQERQMLT PPLPPSPLSM 180 PTSHTIVSNK DQV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011085629.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077904.1	8e-47	agamous-like MADS-box protein AGL80

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26630.1	8e-18	M-type_MADS family protein