PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085706.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 513aa    MW: 56113.5 Da    PI: 8.2161
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085706.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32232288259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vk se+prsYY+Ct+ +Cpvkkkvers  d++++eitY+g+Hnh+
  XP_011085706.1 232 SDGYNWRKYGQKHVKASECPRSYYKCTHLNCPVKKKVERSL-DGRITEITYKGRHNHD 288
                     7****************************************.***************7 PP
2WRKY107.85.5e-34402460159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYYrCt+agC+v+k+vers+ dp+ v++tYeg+Hnhe
  XP_011085706.1 402 LDDGYRWRKYGQKVVKGNPYPRSYYRCTYAGCNVRKHVERSSADPRSVITTYEGKHNHE 460
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-28223290IPR003657WRKY domain
PROSITE profilePS5081123.915226290IPR003657WRKY domain
SuperFamilySSF1182903.14E-25228290IPR003657WRKY domain
SMARTSM007741.0E-35231289IPR003657WRKY domain
PfamPF031063.3E-24233288IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-36388462IPR003657WRKY domain
SuperFamilySSF1182906.28E-30394462IPR003657WRKY domain
PROSITE profilePS5081137.895397462IPR003657WRKY domain
SMARTSM007742.6E-40402461IPR003657WRKY domain
PfamPF031061.6E-26403460IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MGGTVEEDAS TAPKPKPTIL VPPRASMEFL FTNGSGPWFS PGPMTLVSSF FPEQGPFSFS  60
QLLAGAMASP LPAKPGSLPT NASGKEGNFS SDGKIRPTNL VVASPQPPLE SLSPLFMVPP  120
GLSPSGLLNS PGFCSPLHSP FGMSHQQALA HVTAQAALSQ SFMQMQQAEF QHLSSADAAE  180
PLAKQSSSAP TETSMQQTNP LAPEPESSNM ESSEVSQSEK KTTYVAGDKP ASDGYNWRKY  240
GQKHVKASEC PRSYYKCTHL NCPVKKKVER SLDGRITEIT YKGRHNHDPP QPSKRDRTIN  300
SQVNPVSASQ GQTENSRLNE ATPLCSESAN FQATTQFERH LTASSHNCET EDSAVVVDKE  360
NDNEPIAKRR SMETGPPIPA SSHQTVSESK IVLQTRSEVD LLDDGYRWRK YGQKVVKGNP  420
YPRSYYRCTY AGCNVRKHVE RSSADPRSVI TTYEGKHNHE IPTRRHNSHG IANAPAQQYK  480
TASQKPSLSK EIDYGNKDQI PMTLQRKDEE IAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37233462877Probable WRKY transcription factor 4
2lex_A5e-37233462877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085706.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085706.10.0probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI901e-131WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2G9HBE20.0A0A2G9HBE2_9LAMI; Uncharacterized protein
STRINGMigut.H00670.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-129WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]