PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011085751.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Dof

Protein Properties

Length: 497aa MW: 53362 Da PI: 5.3354

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011085751.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.7e-39	142	202	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_011085751.1 142 PDKILPCPRCNSMETKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSSA 202 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	139	199	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	144	200	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.518	146	200	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	148	184	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MFEVKDPKIK LFGKTIELPE TCAAAVEIGE AAQSCDAAGE DSSNQDPSCS SDSMIDNSNL 60 NGDAEDHESH KCQSVPKQND GKEEDVAHPS TSNELKEDAT PAADEDSKAL SADSDARAVQ 120 TSKTEDDQIE TGNSQEKTLK KPDKILPCPR CNSMETKFCY FNNYNVNQPR HFCKKCQRYW 180 TAGGTMRNVP VGAGRRKNKS SASQFCHLTV PESLQSARVD LPNGVHHPVL NPNGTILAFS 240 SDAPLCESMV SVLDIADKTL RDGARNGFQK PAENGDDQSS GSSTTASSKD KVGQIGLPEL 300 IPNHHPFPPQ VPCFPGAPWP YPWPSVQWSS LVSAPAFGPA SFPLPFYSTA PPYWGCAVPG 360 AWNVPWVIPP APTSSQSHSS PSSSPNSPTL GKHSRDDNIL KPANSEEETR KESNSEKCLW 420 VPKTLRIDDP GEAAKSSIWA TLGIKNDRVD PVGGGGLFKA FGSQSKGDCK AQAPETSTVL 480 QANPAALSRS LSFHESS

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MFEVKDPKIK LFGKTIELPE TCAAAVEIGE AAQSCDAAGE DSSNQDPSCS SDSMIDNSNL  60
NGDAEDHESH KCQSVPKQND GKEEDVAHPS TSNELKEDAT PAADEDSKAL SADSDARAVQ  120
TSKTEDDQIE TGNSQEKTLK KPDKILPCPR CNSMETKFCY FNNYNVNQPR HFCKKCQRYW  180
TAGGTMRNVP VGAGRRKNKS SASQFCHLTV PESLQSARVD LPNGVHHPVL NPNGTILAFS  240
SDAPLCESMV SVLDIADKTL RDGARNGFQK PAENGDDQSS GSSTTASSKD KVGQIGLPEL  300
IPNHHPFPPQ VPCFPGAPWP YPWPSVQWSS LVSAPAFGPA SFPLPFYSTA PPYWGCAVPG  360
AWNVPWVIPP APTSSQSHSS PSSSPNSPTL GKHSRDDNIL KPANSEEETR KESNSEKCLW  420
VPKTLRIDDP GEAAKSSIWA TLGIKNDRVD PVGGGGLFKA FGSQSKGDCK AQAPETSTVL  480
QANPAALSRS LSFHESS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011085751.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085751.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A4D8Y8A3	0.0	A0A4D8Y8A3_SALSN; Dof zinc finger protein DOF5.5
STRING	VIT_14s0108g00980.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-99	cycling DOF factor 2