PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085824.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 259aa    MW: 29940.3 Da    PI: 4.5528
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.85.7e-2164117356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q++ Le+ Fe+++++  e+++eLAkklgL+ rqV +WFqNrRa++k
  XP_011085824.1  64 KKRRLTPDQVNLLEKSFEEENKLEPERKTELAKKLGLQPRQVAIWFQNRRARWK 117
                     5678*************************************************9 PP
2HD-ZIP_I/II1345.4e-4363153191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekkrrl+ +qv+lLE+sFeee+kLeperK+ela++Lglqprqva+WFqnrRAR+ktkqlE+dy++Lk++yd+l+++ +++ ke+++L++el
  XP_011085824.1  63 EKKRRLTPDQVNLLEKSFEEENKLEPERKTELAKKLGLQPRQVAIWFQNRRARWKTKQLERDYDHLKSSYDSLVSNYDSIIKENNKLKAEL 153
                     69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-2056121IPR009057Homeodomain-like
PROSITE profilePS5007118.20459119IPR001356Homeobox domain
SMARTSM003892.3E-2062123IPR001356Homeobox domain
PfamPF000463.5E-1864117IPR001356Homeobox domain
CDDcd000863.86E-1864120No hitNo description
Gene3DG3DSA:1.10.10.605.8E-2265126IPR009057Homeodomain-like
PRINTSPR000311.1E-69099IPR000047Helix-turn-helix motif
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PRINTSPR000311.1E-699115IPR000047Helix-turn-helix motif
PfamPF021836.2E-16119161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDSGRIFFDS SSNGNLLFLG NGDSIFRGGS RVMNMGESSK RRPFFGTAED LYDEEYYDEQ  60
LPEKKRRLTP DQVNLLEKSF EEENKLEPER KTELAKKLGL QPRQVAIWFQ NRRARWKTKQ  120
LERDYDHLKS SYDSLVSNYD SIIKENNKLK AELLFLTEKL QPKESTQEEG FDIQNPNPTP  180
APYLQLIMKV EDRLSTGRQR RGQLLDSGDS YLEYQQGCMA SVEGVKSEED EGSEEGGSYF  240
SDVFAAPEPQ EPVGWFMWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085824.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3914832e-68FQ391483.1 Vitis vinifera clone SS0AP1YK15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085824.10.0homeobox-leucine zipper protein HAT5
SwissprotQ022832e-75HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2G9G4U81e-126A0A2G9G4U8_9LAMI; Homeobox transcription factor
STRINGMigut.H00128.1.p1e-123(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-76homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]