PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086002.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 239aa    MW: 26414.3 Da    PI: 8.3367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086002.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-1161107354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  + +Lr l+P++     +K++Ka+ L +++  +k+L
  XP_011086002.1  61 KSHSEAERRRRERINAHLVTLRGLVPNN-----EKMDKATLLAEVICQVKQL 107
                     58*************************8.....8***********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.21858107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-1361115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-961107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-1362118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1164113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.5E-7146201No hitNo description
CDDcd048732.87E-10146212No hitNo description
SuperFamilySSF550212.98E-6146215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MHNGWIESLM SMYCENQSSR NSMPVKHSLV LDGDKGELVK ASERMGKKIG VPETKTIAAL  60
KSHSEAERRR RERINAHLVT LRGLVPNNEK MDKATLLAEV ICQVKQLRAA ARQASEGLHI  120
PMDADEVQVE ILEHNGGDGS LLLRASLCCD YRPDLLSDIR QAINDLHIQV LKSEISTLGG  180
RVKTVFLVTT GEGDNGYAAQ LEVLVSSVRA ALSKILDKVS ASTEYAQELF SPRKRQRVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086002.11e-176transcription factor bHLH30-like
SwissprotQ9S7Y12e-31BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2G9H6A11e-106A0A2G9H6A1_9LAMI; Uncharacterized protein
STRINGMigut.H01448.1.p1e-101(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67302230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-33bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]