PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086144.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 141aa    MW: 16075.6 Da    PI: 10.4125
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.44.8e-2230121199
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ffkv+    + +s+ l++p +f++++  ++ke    +tl+d++g++W v +  +k++++ ++l++GW++Fv  + L  gDf++F++dg+ +f   
  XP_011086144.1  30 FFKVF--LPNVTSHHLMIPPDFVKKChRIIKE---RVTLKDTNGKKWHVDV--EKTPKGsVFLKNGWQSFVAHHCLTPGDFLLFHYDGHYSF--I 115
                     78888..55555666***********555544...5***************..7777777***************************99999..9 PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     vk+f +
  XP_011086144.1 116 VKIFGT 121
                     999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-2523124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-2624124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.35328122IPR003340B3 DNA binding domain
CDDcd100178.63E-2030119No hitNo description
PfamPF023621.0E-1930120IPR003340B3 DNA binding domain
SMARTSM010191.8E-1730122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MGMAARAESK GRRRGRPNSK ETFSSNGAEF FKVFLPNVTS HHLMIPPDFV KKCHRIIKER  60
VTLKDTNGKK WHVDVEKTPK GSVFLKNGWQ SFVAHHCLTP GDFLLFHYDG HYSFIVKIFG  120
TNGCKKEPPP TTTHVKIEPE I
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086144.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086144.11e-102putative B3 domain-containing protein At5g66980
TrEMBLA0A2G9HI803e-43A0A2G9HI80_9LAMI; Uncharacterized protein
STRINGMigut.B01169.1.p1e-38(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1600666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-22B3 family protein