PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086251.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 552aa    MW: 61710.5 Da    PI: 6.0122
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4141.3e-1261725521374
            GRAS   1 lvelLlecAeavssgdle..........laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                     l++lL++cA+ vs+ d+           +a+al+  +++++s  g+p++Rl ay++e+L+ar+++s+s + k+l+++e +   sse ++++++++
  XP_011086251.1 172 LKQLLVACAKIVSEADTIslserrvavsAAEALMDIIEKRVSICGEPLERLGAYMLEGLRARILSSGSIIHKKLKCKEPT---SSELMSYMHVLY 263
                     5799********997763344455666599999999*******************************************9...99********** PP

            GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                     +++P++kf+++ aN  I ea+e+e+r+HiiDf+i qG QW++++qa++ Rp+gpp +RiTgv++++s   +   l+ +g+rLa++Ae++gvpfef
  XP_011086251.1 264 QICPYYKFAYMSANVVIAEAMENENRIHIIDFQIAQGSQWVTFIQAISHRPGGPPYIRITGVDDSQSAhaRGGGLQIVGHRLAQVAESCGVPFEF 358
                     ****************************************************************9988889999********************* PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                     +  +a +  +++le+L+v++gEalaVn+ + lh+++desvs++++rd++L+lvkslsPk+v++veqe+++n+++F++rf e+l+yy+a+f+s++a
  XP_011086251.1 359 HG-AAISGCEVQLENLQVRHGEALAVNFPYILHHMPDESVSTTNHRDRLLRLVKSLSPKIVTLVEQESNTNTGTFFQRFGETLDYYTAMFESIDA 452
                     **.888999************************************************************************************** PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                       pr++++ri+ E+++++r++vn++aceg++r+erhe ++kWr r+++aGF+pvpls ++  +++ +l++++ + yrv e+sg+l+lgWk+r+L 
  XP_011086251.1 453 ACPRDDKQRINAEEHCVARDVVNIIACEGNDREERHELFGKWRLRFTMAGFSPVPLSPSVSYTISDMLKEHSPN-YRVAESSGALYLGWKHRALA 546
                     ************************************************************************55.******************** PP

            GRAS 369 svSaWr 374
                     + SaWr
  XP_011086251.1 547 TSSAWR 552
                     *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.865146533IPR005202Transcription factor GRAS
PfamPF035144.7E-124172552IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MQESQESQTS SSVHSFYHQT MQHIEPYCLS TFEVLNDDST HIRRQATEFP LRTYAEQFFT  60
LESTPASEYA VYNSPSTPGV SSNMSPFSPQ YFQSYASDLH HASDNPCGSP MSGSSGVDDE  120
NKLMHALWVL RNELLGPECD SDSNGSLNGI VTQASPFTRY NRILEMAPHM DLKQLLVACA  180
KIVSEADTIS LSERRVAVSA AEALMDIIEK RVSICGEPLE RLGAYMLEGL RARILSSGSI  240
IHKKLKCKEP TSSELMSYMH VLYQICPYYK FAYMSANVVI AEAMENENRI HIIDFQIAQG  300
SQWVTFIQAI SHRPGGPPYI RITGVDDSQS AHARGGGLQI VGHRLAQVAE SCGVPFEFHG  360
AAISGCEVQL ENLQVRHGEA LAVNFPYILH HMPDESVSTT NHRDRLLRLV KSLSPKIVTL  420
VEQESNTNTG TFFQRFGETL DYYTAMFESI DAACPRDDKQ RINAEEHCVA RDVVNIIACE  480
GNDREERHEL FGKWRLRFTM AGFSPVPLSP SVSYTISDML KEHSPNYRVA ESSGALYLGW  540
KHRALATSSA WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-5521655153378Protein SCARECROW
5b3h_A9e-5521655152377Protein SCARECROW
5b3h_D9e-5521655152377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086251.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086251.10.0scarecrow-like protein 21
RefseqXP_020551582.10.0scarecrow-like protein 21
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A022QK740.0A0A022QK74_ERYGU; Uncharacterized protein
STRINGMigut.M01421.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13