PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086441.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 322aa    MW: 35233.4 Da    PI: 10.2221
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086441.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.7e-1393137347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ + ++ G+g+W+ I+r   k+Rt+ q+ s+ qky
   XP_011086441.1  93 PWSEEEHRLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 137
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.94986142IPR017930Myb domain
SuperFamilySSF466892.02E-1688143IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-1789140IPR006447Myb domain, plants
SMARTSM007177.0E-1090140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-1092137IPR009057Homeodomain-like
PfamPF002491.6E-1093137IPR001005SANT/Myb domain
CDDcd001672.64E-993138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAAVQGGKCS DYSAMDDGRS SGTSSEVSGG KGFMLFGVRV MMEGSFRKSA SMNNLAQYDQ  60
QPQDSNNDVA SGYASDDVVH PSGRSRERKR GVPWSEEEHR LFLLGLQKVG KGDWRGISRN  120
YVKTRTPTQV ASHAQKYFLR RNNHNRRRRR SSLFDITTDA VVGSAIEDQM HQENSPQPPI  180
AQQQNLSKNL EKFPMSTYPV AITPLVVPIT SENHVENRTL GQVNQLNNSP RPIRPIPILP  240
VPPSSKMANL NLNKTTSLQP PSLSLNLSIS SQSPPPLPPS SQEPPPPPPS NQQSPPARHT  300
STFQAMPASF NESGGDSIIS VA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086441.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0086618e-84KF008661.1 Scutellaria baicalensis MYB12 (myb) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086441.10.0transcription factor MYB1R1
TrEMBLA0A2G9HKS21e-151A0A2G9HKS2_9LAMI; Uncharacterized protein
STRINGMigut.L01371.1.p1e-128(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114232225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.28e-63MYB_related family protein