PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011086728.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Trihelix

Protein Properties

Length: 400aa MW: 44825.7 Da PI: 6.0327

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011086728.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.6	1.2e-26	76	160	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++aLi +r+e++ ++++k++k+lW+ +s kmre+gf rsp++C++kw+nl k+ykk k+++++++ + s +++y++++e XP_011086728.1 76 WVQEETRALISLRKELDLLFNTSKSNKHLWDNISLKMREKGFDRSPTMCTDKWRNLLKEYKKAKQNNQDGNGNGSAKMSYYKEIE 160 *********************************************************************9*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-5	66	137	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.653	68	132	IPR017877	Myb-like domain
SMART	SM00717	5.2E-6	72	134	IPR001005	SANT/Myb domain
CDD	cd12203	1.55E-27	74	139	No hit	No description
Pfam	PF13837	9.5E-21	75	162	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MFMSEKPQQE SALDFYNSKQ QLQSHPSNMI IQLPPQPHHL LTDGGDATTS GGDEPPAAAS 60 SNPPSSSAPK KRAETWVQEE TRALISLRKE LDLLFNTSKS NKHLWDNISL KMREKGFDRS 120 PTMCTDKWRN LLKEYKKAKQ NNQDGNGNGS AKMSYYKEIE EILRDRSKNG LNWKSSAAAS 180 NNGGGGGGSK VDSFMQFADK GIDDNSLTFG PVEANGRSTL NLERRLDHEG HPLAITAADA 240 VGASGVSPWN WRETPGDAGE HSNTYDGRVI TVKLGDYTKR IGVDGTADAI KEAIKSAFRL 300 RTKRAFWLED EDNVVRTLDR DMPLGNYTLH VDEGLTIKVC FYEESEHLPV HTEDKTFYTE 360 DDFRDFLSRR GWTCLREYNG YRNIDSMDEL CPGAIYRGVN

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MFMSEKPQQE SALDFYNSKQ QLQSHPSNMI IQLPPQPHHL LTDGGDATTS GGDEPPAAAS  60
SNPPSSSAPK KRAETWVQEE TRALISLRKE LDLLFNTSKS NKHLWDNISL KMREKGFDRS  120
PTMCTDKWRN LLKEYKKAKQ NNQDGNGNGS AKMSYYKEIE EILRDRSKNG LNWKSSAAAS  180
NNGGGGGGSK VDSFMQFADK GIDDNSLTFG PVEANGRSTL NLERRLDHEG HPLAITAADA  240
VGASGVSPWN WRETPGDAGE HSNTYDGRVI TVKLGDYTKR IGVDGTADAI KEAIKSAFRL  300
RTKRAFWLED EDNVVRTLDR DMPLGNYTLH VDEGLTIKVC FYEESEHLPV HTEDKTFYTE  360
DDFRDFLSRR GWTCLREYNG YRNIDSMDEL CPGAIYRGVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-41	70	158	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00640	PBM	Transfer from MDP0000164819	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011086728.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ044649	4e-52	KJ044649.1 Sesamum indicum clone TilSSR_15850 microsatellite Sesame_15850 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086728.1	0.0	trihelix transcription factor GT-4 isoform X1
Swissprot	Q9FX53	1e-164	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A2G9I9G9	0.0	A0A2G9I9G9_9LAMI; Transcription factor GT-2
STRING	Migut.E00236.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-164	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]