PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011086729.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 399aa    MW: 44754.6 Da    PI: 6.0327
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011086729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.61.2e-2676160286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++aLi +r+e++  ++++k++k+lW+ +s kmre+gf rsp++C++kw+nl k+ykk k+++++++ + s +++y++++e
  XP_011086729.1  76 WVQEETRALISLRKELDLLFNTSKSNKHLWDNISLKMREKGFDRSPTMCTDKWRNLLKEYKKAKQNNQDGNGNGSAKMSYYKEIE 160
                     ***********************************************************************9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-566137IPR009057Homeodomain-like
PROSITE profilePS500908.65368132IPR017877Myb-like domain
SMARTSM007175.2E-672134IPR001005SANT/Myb domain
CDDcd122031.65E-2774139No hitNo description
PfamPF138379.5E-2175162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MFMSEKPQQE SALDFYNSKQ QLQSHPSNMI IQLPPQPHHL LTDGGDATTS GGDEPPAAAS  60
SNPPSSSAPK KRAETWVQEE TRALISLRKE LDLLFNTSKS NKHLWDNISL KMREKGFDRS  120
PTMCTDKWRN LLKEYKKAKQ NNQDGNGNGS AKMSYYKEIE EILRDRSKNG LNWKSSAAAS  180
NNGGGGGGSK VDSFMQFADK GIDDNSLTFG PVEANGRSTL NLERRLDHEG HPLAITAADA  240
VGASGVSPWN WRETPGDGEH SNTYDGRVIT VKLGDYTKRI GVDGTADAIK EAIKSAFRLR  300
TKRAFWLEDE DNVVRTLDRD MPLGNYTLHV DEGLTIKVCF YEESEHLPVH TEDKTFYTED  360
DFRDFLSRRG WTCLREYNGY RNIDSMDELC PGAIYRGVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4170158186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00640PBMTransfer from MDP0000164819Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011086729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0446494e-52KJ044649.1 Sesamum indicum clone TilSSR_15850 microsatellite Sesame_15850 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086729.10.0trihelix transcription factor GT-4 isoform X2
SwissprotQ9FX531e-165TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A2G9I9G90.0A0A2G9I9G9_9LAMI; Transcription factor GT-2
STRINGMigut.E00236.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-164Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]