PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087013.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TCP
Protein Properties Length: 412aa    MW: 46305.9 Da    PI: 6.5674
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.97.8e-34120217188
             TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec...eaesssssasns 85 
                     +ag+kdrhsk++T++g+RdRR Rls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l ++        s++a+++   ++++ +s++ ++
  XP_011087013.1 120 PAGRKDRHSKVCTARGPRDRRLRLSPKTAIEFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALDEQpalgsnyHSTAANATeyhSPQNGRSQQMQQ 214
                     589**************************************************************888877733333333334333333333333 PP

             TCP  86 ssg 88 
                     +sg
  XP_011087013.1 215 ESG 217
                     333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.7E-31122218IPR005333Transcription factor, TCP
PROSITE profilePS5136931.074123181IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MYSPGNQLRL PDDEEDQPED GENCKSRNGA IREPGPEAVR SYYHQHFGQT QDYREKSLHA  60
QNERWADFAS PSAVSTASGH IKINYGRLMQ EVLHFASPKS KAKKRKAEMI EVPCDRIVRP  120
AGRKDRHSKV CTARGPRDRR LRLSPKTAIE FYDVQDRLGY DRPSKAIDWL IKEAKAAIDA  180
LDEQPALGSN YHSTAANATE YHSPQNGRSQ QMQQESGRFL ISEDGMIQKN EHLNDDNSIS  240
GFSFFTDGAV LSSSSELQAY PNHGFNPSRI RNEDPEDSTL YPSYQQGFCS TSTLTTTTSQ  300
ILETNWEMVR LQRILNENSG NTRVGGAAEY SSFNSLPLHF QAQAISGHSH MFSQREPLQS  360
SNINSFPGST HCPGFSFSNE LSNITAAATR KEDVKDDRPV FSKPSSFLHY ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-18128181154Putative transcription factor PCF6
5zkt_B3e-18128181154Putative transcription factor PCF6
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105PKSKAKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087013.10.0transcription factor TCP4-like
TrEMBLA0A2G9I0L43e-87A0A2G9I0L4_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.39e-34TCP family protein