PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087078.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 243aa    MW: 27832.8 Da    PI: 8.1283
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000137193123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C k+F ++  L  H++ H
  XP_011087078.1 71 FECQYCLKVFANSQALGGHQNAH 93
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.83E-66798No hitNo description
Gene3DG3DSA:3.30.160.604.9E-56797IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.3E-67195IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.4277198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MERNSLSCSQ ERSSPEKKLK LFGVELEPSD ILETDRDKGF PSDRDESINS SASSTVTEKP  60
TGELELEDKK FECQYCLKVF ANSQALGGHQ NAHKKERMRK KRLQLQARKA TLNYYIQPFH  120
YNSSQHSNKH SYNCYGSSTT PAWYYDPSCH PPEFSIYDES QINFDVYGSD PIMNGRESSR  180
WHVDLTDYVP VQQNTRTFSL THVDRSSDKY SRAISNKPST GPNSSKKLCS RKNLDLQLGL  240
SLH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087078.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087078.10.0zinc finger protein 5
TrEMBLA0A2G9HUT89e-84A0A2G9HUT8_9LAMI; Uncharacterized protein
STRINGEOY003285e-64(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.11e-14zinc finger protein 5