PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087090.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family YABBY
Protein Properties Length: 223aa    MW: 25093.8 Da    PI: 7.2655
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087090.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY175.72.9e-5481674166
           YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesast 94 
                      +  +q+Cyv+C+fC+til+vsvP +sl++vvtv+CGhCt +lsvn+++a     +l ++ sh        + ++ + ++e +++ v +++ + +
  XP_011087090.1   8 LDLQDQICYVKCGFCSTILLVSVPCSSLSMVVTVKCGHCTRILSVNMMTARlvplHLFSSLSH--------QEHTVQPKREVCSEEVLADK-KAA 93 
                     5789******************************************99876444444444444........33334444444433333332.233 PP

           YABBY  95 svsseklsenedeev..prvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
                           ls ++deev     + + +PPek+qr+Psayn fikeei+r+k + P+++h++afsaaaknWah P+ 
  XP_011087090.1  94 IGCFPPLSFSSDEEVdeDSNQVIHKPPEKKQRAPSAYNHFIKEEIKRLKIEYPNMTHKQAFSAAAKNWAHCPQS 167
                     333334444444444003334478************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.2E-5611168IPR006780YABBY protein
SuperFamilySSF470952.62E-8114167IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.5E-6118168IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSTLDNLLDL QDQICYVKCG FCSTILLVSV PCSSLSMVVT VKCGHCTRIL SVNMMTARLV  60
PLHLFSSLSH QEHTVQPKRE VCSEEVLADK KAAIGCFPPL SFSSDEEVDE DSNQVIHKPP  120
EKKQRAPSAY NHFIKEEIKR LKIEYPNMTH KQAFSAAAKN WAHCPQSQYR DGEVHGYAGE  180
PDRNLAMVKQ STEDVVCNEV HCFGNGFHDT KALKQCICRK PHF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4514004e-54AY451400.1 Antirrhinum majus YABBY-like transcription factor INNER NO OUTER-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087090.11e-168axial regulator YABBY 4
TrEMBLA0A2G9GYG91e-105A0A2G9GYG9_9LAMI; Uncharacterized protein
STRINGMigut.L01462.1.p3e-78(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.15e-52YABBY family protein