PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087126.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 529aa    MW: 58938.1 Da    PI: 4.6684
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087126.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-183886355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  XP_011087126.1 38 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 86
                    67******.**********965...5*************************98 PP
2AP256.95.1e-18301349355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++++g
  XP_011087126.1 301 FLGVRRRP-WGRYAAEIRDPLT---KERHWLGTFDTAEEAALAYDRAARSMRG 349
                     67******.**********843...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.7193794IPR001471AP2/ERF domain
CDDcd000187.14E-303793No hitNo description
Gene3DG3DSA:3.30.730.101.0E-283794IPR001471AP2/ERF domain
SMARTSM003802.3E-3437100IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-203895IPR016177DNA-binding domain
PRINTSPR003671.0E-73849IPR001471AP2/ERF domain
PfamPF008471.4E-114086IPR001471AP2/ERF domain
PRINTSPR003671.0E-76076IPR001471AP2/ERF domain
PROSITE profilePS5103220.415300357IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-28300357IPR001471AP2/ERF domain
SMARTSM003802.8E-33300363IPR001471AP2/ERF domain
CDDcd000187.37E-29300356No hitNo description
SuperFamilySSF541713.14E-20301358IPR016177DNA-binding domain
PfamPF008474.3E-11303349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MDSMNKSSGA SAASPSKSKR KGSQQQQQNQ QESSTNRFLG VRRRPWGRYA AEIRDPSTKE  60
RHWLGTFDTA EEAALAYDRA ARSMRGSRAR TNFVYSDMPP GSSVTSIISP DETRHDFSML  120
FADSQHSDHS TAEQQLFFFG QSELNTSPYP GFQLTGDAWK NSNTNANISM YEQQVSTSEY  180
EYRPTPSDGV SASHDLPPLP PDITSSCYSG EPPVLSELGH GVLNDMRYLE LSEPRLSMDA  240
GHGYDVGEAY MGYDDSMNSG RNSFSGFGCM NKSGANDPSP SKSKRKGNQQ QNQQESSTNR  300
FLGVRRRPWG RYAAEIRDPL TKERHWLGTF DTAEEAALAY DRAARSMRGS RTRTNFVYSD  360
MPPGSSVTSI ISPDETNHDF LMLLADSQHS DHNPTDHQLF LFGQNELNTS QFPGFQLTGD  420
AWNQNNTNAN IMSMYQVDNS EYQYQTTPPD SAHELPPLPP DITSSCYSGE LPVLSEIGNE  480
VLNDMRHLEL SEQQLGMDAT APYDVAEAYL GFDDSMNNAG NSFSDFGWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1938356359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087126.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551701.10.0uncharacterized protein LOC105168692
SwissprotQ9M6443e-46LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A2G9GQP71e-119A0A2G9GQP7_9LAMI; Uncharacterized protein
STRINGMigut.K01126.1.p9e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-36ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]