PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011087146.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 189aa MW: 21173.8 Da PI: 10.8407

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011087146.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.6e-09	20	69	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + +E++RR +++ ++L +l+P +k+p++ ls + Le+A+ YIk L XP_011087146.1 20 KTIEKNRRILMKTLCFKLVSLIPDhHFKPPKELLSQQDQLEQATTYIKLL 69 689*******************999999999************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.03E-4	12	74	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.2E-7	13	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.369	14	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.01E-8	18	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.3E-6	20	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MMEGTAGEGS SRRSCKLERK TIEKNRRILM KTLCFKLVSL IPDHHFKPPK ELLSQQDQLE 60 QATTYIKLLA ARVEEMKRRK TQAVMTSTTA NPTRSSKNNA GFMGRSKPPV VKIRELGSNL 120 EVVLISGLCK TVMLHQVISI IEQEGAEVVN VNLSNIAGQI FHTIHAQVKV SRVGVDSTRI 180 RVRIQELIS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011087146.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087146.1	1e-137	uncharacterized protein LOC105168709
TrEMBL	A0A4D9A3E4	1e-62	A0A4D9A3E4_SALSN; Uncharacterized protein
STRING	GLYMA05G02110.2	4e-61	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6083	14	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-23	bHLH family protein