PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087147.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 181aa    MW: 20170.5 Da    PI: 9.9948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-081870654
                    HHHHHHHHHHHHHHHHHHHCTSCCC.......TTS-STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkas....kapskKlsKaeiLekAveYIksL 54
                    + +E++RR+ ++s  ++L +l+P++     + + + ls  + +e+A+ YIk L
  XP_011087147.1 18 KTIEKNRRNLMKSLCFKLVSLIPPPHrhfdSSKVEELSQKDQVEQATTYIKLL 70
                    689*********************888**9999999***************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.7121270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-71684IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-91685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-51870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.61E-42075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MIMEGTTGEG SSGKLERKTI EKNRRNLMKS LCFKLVSLIP PPHRHFDSSK VEELSQKDQV  60
EQATTYIKLL TQRVEEMRRR KSQALMTASA STSIMGGSKL PVLEIRELGS NLEVVLISGL  120
CKTFMLHQII SILQEEGAEV VNVNVSNIAG QTFHTIHAQV KVPRVGVDTS GIRMRIQELI  180
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681MRRRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087147.11e-129uncharacterized protein LOC105168711
TrEMBLB9IEQ22e-56B9IEQ2_POPTR; Uncharacterized protein
STRINGPOPTR_0015s08580.13e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60831423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-25bHLH family protein