PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011087184.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

MYB_related

Protein Properties

Length: 312aa MW: 33451.7 Da PI: 9.4177

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011087184.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.1	4.8e-14	103	147	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky XP_011087184.1 103 PWTEEEHKLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 147 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.011	96	152	IPR017930	Myb domain
SuperFamily	SSF46689	6.36E-17	98	153	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-17	99	150	IPR006447	Myb domain, plants
SMART	SM00717	3.8E-10	100	150	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.8E-11	102	147	IPR009057	Homeodomain-like
CDD	cd00167	1.21E-9	103	148	No hit	No description
Pfam	PF00249	2.3E-11	103	147	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MSASGESPSA AVSSGGSCGG GGGVGEFMLF GVRVKVDPMR KCVSMNNLSE YEPVSNTSNP 60 SDNSGTELPK AAAEGGVAAG YASADDAVPQ PSNGSRERKR GVPWTEEEHK LFLLGLQKVG 120 KGDWRGISRN YVKTRTPTQV ASHAQKYFLR RSNLNRRRRR SSLFDITTDS VTALPMEEGK 180 YQKDSSTPPA LQPTTMPLPV NSNINGFSVM PFPATGGPVL LPMQGVNPME NLIQNDRVNN 240 PSALLVHPVP ILPMPTSSTM VDLNLNHQVP LDPSPLSLRL SLSSGHDQSS RRDLSFQVFS 300 SFKNGDSIIS VA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011087184.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087184.1	0.0	transcription factor MYB1R1-like
Swissprot	Q2V9B0	4e-86	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2G9GK84	1e-120	A0A2G9GK84_9LAMI; Uncharacterized protein
STRING	Migut.D01891.1.p	1e-107	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	2e-51	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]