PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087225.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 89aa    MW: 9883.25 Da    PI: 9.2854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52.1e-0714551454
                    HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    d+iN+ + +L+ llP  +s+ ++  +s + i++++++Y+k+L
  XP_011087225.1 14 DEINDLILKLQALLPDsSSRSHNSMVSASKIVKETCNYLKKL 55
                    78**************666888888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.638155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-81473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-41455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-71470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSNRRARVSR ITEDEINDLI LKLQALLPDS SSRSHNSMVS ASKIVKETCN YLKKLHKEVD  60
DLSERLSQLL ASGAITSTNA DAISSLLRQ
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087225.18e-57transcription factor ILI5-like
SwissprotQ9LJX14e-23PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A022Q8S89e-35A0A022Q8S8_ERYGU; Uncharacterized protein
TrEMBLA0A4D9BJ579e-35A0A4D9BJ57_SALSN; Uncharacterized protein
STRINGMigut.D01841.1.p1e-35(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-25bHLH family protein