PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087345.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 238aa    MW: 25802.7 Da    PI: 10.8409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087345.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.59e-172267555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    hn+ ErrRRdriN+++ +L++l+P+a      K +Ka++L +++eY+k+Lq
  XP_011087345.1 22 HNQSERRRRDRINEKMKTLQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 67
                    9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS50888181766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-202090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-142267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-172271No hitNo description
Gene3DG3DSA:4.10.280.109.1E-202278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-182372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MTNGQSFRSQ SSTRRSRAAA IHNQSERRRR DRINEKMKTL QKLVPNASKT DKASMLDEVI  60
EYLKQLQAQV QMMSSARNMP QMIVPLGMQQ QLQMALLARM GIGMGMGMGM GMSGMGMGML  120
DVNNLAQNLP RSVPPFIHAA AASPLGGTTT ASFVSPPFAM PPMVPSPPPA TAPLKANVDA  180
AHVNASVPNF NDAYNTFLTQ QSMNMDLFNK MAAALYRSQQ PNQPLTSSHS HPNDAAAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12530ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087345.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087345.21e-173transcription factor UNE10-like
TrEMBLA0A4D9A5J75e-77A0A4D9A5J7_SALSN; Phytochrome-interacting factor 3
STRINGXP_002514702.12e-67(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.16e-28bHLH family protein