PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087508.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 351aa    MW: 39324.6 Da    PI: 7.8865
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.6e-06326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k++lC+ffa  G C  G+ C F+H+
  XP_011087508.1  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                    99****6666.*************5 PP
2zf-CCCH23.11.3e-073454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C f+++ G C yG+rC++ H+
  XP_011087508.1 34 ICTFYLK-GVCAYGSRCRYEHV 54
                    7******.***********997 PP
3zf-CCCH18.63.3e-06133154426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C+ fa+ G C++G++C+ +Hg
  XP_011087508.1 133 SICS-FAAAGDCPHGEKCPHIHG 154
                     6788.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.232956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00183055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-43453IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.826129156IPR000571Zinc finger, CCCH-type
SMARTSM003560.16130155IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.78E-13190262No hitNo description
Gene3DG3DSA:3.30.40.108.3E-10192257IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.70E-4197257No hitNo description
PfamPF136392.3E-7197256IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.312198256IPR001841Zinc finger, RING-type
SMARTSM001842.3E-7198255IPR001841Zinc finger, RING-type
PROSITE patternPS005180222231IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.507285314IPR000571Zinc finger, CCCH-type
SMARTSM003560.15285313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKAP PNNICTFYLK GVCAYGSRCR YEHVKVSRQS  60
SAPSSEDISF PVERLSGTAT HSTGILADAA AKHSASSEPP ARPAWETMSG HDNILDQGYG  120
VGYFSNVDSA DQSICSFAAA GDCPHGEKCP HIHGDLCPIC GKHCLHPFRP QEREEHMKTC  180
EKRQKHLEVL RHSQEIECSV CLERILSKPT TAERKFGILS ECDHPFCVTC IRNWRSSSPS  240
SGLDVNSALR GCPICRKLSY FVIPSVIWYS SKEEKQDIID SYKAKLRSID CKHFDFGNGT  300
CPFGTSCFYK HAYRDGRPEE VVLRHLGAED GNTVIAKNMR LSDFLRNLQI R
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087508.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087508.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA071e-166C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2G9HML20.0A0A2G9HML2_9LAMI; Putative E3 ubiquitin ligase
STRINGXP_002526765.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-158C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]