PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011087626.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 665aa    MW: 74289.8 Da    PI: 6.295
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011087626.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.3e-22127227198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+++       +++    ++l+  d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F   + +
  XP_011087626.1 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGE 217
                     99****************************964333..4459************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_011087626.1 218 NGELRVGVRR 227
                     999*****97 PP
2Auxin_resp112.83.2e-37253335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F+v+Y+Pr+s+seF+v+++k+++a ++k+svGmRfkm+fe+e+++err+sGt+vg  +  ++rWp+S+WrsLk
  XP_011087626.1 253 ASHAISTRTLFSVFYKPRTSRSEFIVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERRFSGTIVGFVNNASSRWPDSEWRSLK 335
                     789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-43117256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-40124242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-20125227No hitNo description
SMARTSM010196.8E-21127229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.265127229IPR003340B3 DNA binding domain
PfamPF023621.2E-20127227IPR003340B3 DNA binding domain
PfamPF065076.8E-35253335IPR010525Auxin response factor
PROSITE profilePS5174526.529542634IPR000270PB1 domain
PfamPF023093.1E-6542579IPR033389AUX/IAA domain
SuperFamilySSF542777.19E-12544620No hitNo description
PfamPF023096.2E-7586632IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MAHLAANHFG GGPPPGALND ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTH  60
QGLDQQLPSF NLPSKILCNV MHVHLRAEPD TDEVYAQITL IPEQDQSEVT SPDPPLPEPE  120
RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAS DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE LRVGVRRLMR QLNNMPSSVI  240
SSHSMHLGVL ATASHAISTR TLFSVFYKPR TSRSEFIVSL NKYLEAQNHK LSVGMRFKMR  300
FEGEEVPERR FSGTIVGFVN NASSRWPDSE WRSLKVQWDE PSPILRPDTV SPWEIEPLVA  360
ATPPNSQNQQ RNKRARPPAL PSPMQDLSSL GMWKSPADSP SAFPYHDPSR VRDLYQSPKL  420
SSGTRVSSMS YNENLLPVSS NSVYQPNQIE TAAESFTPVS EKRQANGCRL FGIELLDHST  480
VEDTSPVVHP GAAIEDSHIP LDAESEHSEP SNRNPSDVPS VSCGPDKSCL RSPHEPHSRQ  540
IRSCTKVHMQ GIAVGRAVDL TRFDCYEDLL RKLEEMFEIV GELSGSTKKW QVVYTDDEDD  600
MMMVGDDPWH EFCTMVKKIY IYTAEEAKML SPKIKLPLAE VKSGKLLSEA AVGTEELSST  660
VGSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.043581355Auxin response factor 1
4ldw_A0.043581355Auxin response factor 1
4ldw_B0.043581355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011087626.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087626.10.0auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A2G9HMH60.0A0A2G9HMH6_9LAMI; Auxin response factor
STRINGMigut.B00723.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58381923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]