PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011087822.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Trihelix

Protein Properties

Length: 379aa MW: 43834.6 Da PI: 5.1347

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011087822.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.1	1.3e-24	113	198	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 rWt+++v+ Li+a++++++++++++ +k++W+++s+ m erg+++sp+qC++k+++lnk++k++++ +++ +++++++ ++ +++ XP_011087822.1 113 RWTDEMVRILIAAVSYVGDDVSSDCPIKGKWRAISNIMVERGYTVSPQQCEDKFNDLNKKFKRLNDLLGRNiSCDVVENPALMESM 198 8********************************************************************99899999999998888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.051	110	170	IPR017877	Myb-like domain
Pfam	PF13837	8.9E-18	113	224	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MEDIFQVFGD MMRSGPLNFQ ESQEPVQINH QQAPDSYSYG SFSFNQQKIP DAFSFGVDGI 60 QQFGQPVMLL DGNKDEGMNQ FAGNNQSPNG QCGPNRLPEG SIEKTEQVWQ RIRWTDEMVR 120 ILIAAVSYVG DDVSSDCPIK GKWRAISNIM VERGYTVSPQ QCEDKFNDLN KKFKRLNDLL 180 GRNISCDVVE NPALMESMNI SEEAKEEVRK ILTCKQLFYQ EMCSYHNKNR KFLAHDVPLQ 240 QSVQSALKGK AKCDDQNVIL SMPAKRQKHG EDNGVPSWAD THPPGKELTD LINVPPEVIE 300 GQQELSQWMI SRSLQLEEKK LQIQNQMLEL EKRKFEWLKF CQQEDRELHK MRLENEVMKL 360 ENERLAFELK CRERSYARD

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MEDIFQVFGD MMRSGPLNFQ ESQEPVQINH QQAPDSYSYG SFSFNQQKIP DAFSFGVDGI  60
QQFGQPVMLL DGNKDEGMNQ FAGNNQSPNG QCGPNRLPEG SIEKTEQVWQ RIRWTDEMVR  120
ILIAAVSYVG DDVSSDCPIK GKWRAISNIM VERGYTVSPQ QCEDKFNDLN KKFKRLNDLL  180
GRNISCDVVE NPALMESMNI SEEAKEEVRK ILTCKQLFYQ EMCSYHNKNR KFLAHDVPLQ  240
QSVQSALKGK AKCDDQNVIL SMPAKRQKHG EDNGVPSWAD THPPGKELTD LINVPPEVIE  300
GQQELSQWMI SRSLQLEEKK LQIQNQMLEL EKRKFEWLKF CQQEDRELHK MRLENEVMKL  360
ENERLAFELK CRERSYARD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011087822.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087822.1	0.0	uncharacterized protein LOC105169180 isoform X1
Refseq	XP_020552155.1	0.0	uncharacterized protein LOC105169180 isoform X1
TrEMBL	A0A022PUN5	1e-127	A0A022PUN5_ERYGU; Uncharacterized protein
STRING	Migut.B00650.1.p	1e-128	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12585	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	2e-74