PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011088089.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Protein Properties

Length: 246aa MW: 28187.7 Da PI: 10.682

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088089.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.6	2.2e-18	11	98	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv+ ++++ l lp f+++ + ke+s++ ++++ +W++k++ + ++g++ l++GW Fv a+gL +gDfvvF+++g+ f + v XP_011088089.1 11 FFKVM--IPGFQQK-LNLPPGFCKKLK--KEKSREAIVTS-GKGTWKMKVCRNVGGGMMSLEDGWGAFVCAHGLSVGDFVVFEHTGQLHF--NALV 98 78888..4555555.89****9887..45777888777.5569*99999999***********************8775444..4444 PP
2	B3	58.4	1.3e-18	140	232	1	91
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 f+ +++p +++k+gr+++p kf+++++++k +s+tl+ d + r W+v++ ++ +++ + +GW +F an+Lk+gD++vF+l++r s++ XP_011088089.1 140 FILTMKPYHAHKQGRVTIPVKFMRSNNLEKISSVTLRSPDHERRAWSVRVLVEETPNLrGRMDRGWHDFYVANKLKDGDVCVFELNRRlSRRP 232 77899999****************99999998888888888***9944444335699********************99966654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.8E-21	8	104	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.364	8	102	IPR003340	B3 DNA binding domain
CDD	cd10017	7.16E-18	9	100	No hit	No description
SuperFamily	SSF101936	1.96E-20	9	107	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.5E-14	11	102	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.9E-15	11	95	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.4E-21	132	227	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-19	135	226	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.81E-19	138	230	No hit	No description
PROSITE profile	PS50863	12.717	140	245	IPR003340	B3 DNA binding domain
SMART	SM01019	5.4E-9	140	238	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.7E-16	140	232	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MAEKLAASRH FFKVMIPGFQ QKLNLPPGFC KKLKKEKSRE AIVTSGKGTW KMKVCRNVGG 60 GMMSLEDGWG AFVCAHGLSV GDFVVFEHTG QLHFNALVFD PSACEKEFLV EFKKEHRHQD 120 TANTRRKSGH VSYHSKKPHF ILTMKPYHAH KQGRVTIPVK FMRSNNLEKI SSVTLRSPDH 180 ERRAWSVRVL VEETPNLRGR MDRGWHDFYV ANKLKDGDVC VFELNRRLSR RPTSVSLDVK 240 ILTTLV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088089.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088089.1	0.0	B3 domain-containing protein Os01g0723500-like
TrEMBL	A0A2G9H526	3e-94	A0A2G9H526_9LAMI; Uncharacterized protein
STRING	Migut.D01639.1.p	1e-77	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8536	16	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	5e-21	B3 family protein