PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088099.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 149aa    MW: 16433.7 Da    PI: 8.5846
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088099.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.71.1e-095476527
                    --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                     C++f  tG C+yGd+Ck+ H++
  XP_011088099.1 54 VCNRFVLTGSCRYGDSCKYYHPK 76
                    6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.15E-11436No hitNo description
PfamPF062202.1E-9535IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.8734977IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-75179IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-45176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-65475IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-75476IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPA ARRRHLQGVL HQRAKCFSVG LDQVQDPRSV GKGVCNRFVL  60
TGSCRYGDSC KYYHPKKNME NMNTQGMEGT SSVSNAQSRG IPGSTIHVEA SLPAVLLGNQ  120
MGTSLQNLPP SLWPPPEGGY PPLPFIDWG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088099.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551848.11e-104zinc finger CCCH domain-containing protein 3
SwissprotQ0JP116e-41C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A2G9I7N41e-88A0A2G9I7N4_9LAMI; U1 snRNP-specific protein C
STRINGMigut.B00859.1.p9e-71(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120081821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-26C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]