PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088128.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 436aa    MW: 47933.6 Da    PI: 8.7486
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088128.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83e-30172231159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_011088128.1 172 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDRSILITTYEGTHNHP 231
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-32157233IPR003657WRKY domain
SuperFamilySSF1182906.93E-28165233IPR003657WRKY domain
PROSITE profilePS5081129.046167233IPR003657WRKY domain
SMARTSM007741.2E-36172232IPR003657WRKY domain
PfamPF031062.9E-27173231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MMSSLKLRMN EMKEENKMLR GAVEQTIKDY TDLQAKISII QRNSSRHNKK DPNIDFSLMI  60
GNQKGGHEVT EQGSKISPRS VGSFNQTASV VSSDEPHMDD TEKEQVGLSL RLQSSSSKVE  120
GDDERVEKTK DVMMRGLQAQ LHSNIMSSST INSQHNKRAR VSVRARCEAA TMNDGCQWRK  180
YGQKIAKGNP CPRAYYRCTV APGCPVRKQV QRCLEDRSIL ITTYEGTHNH PLPVGATAMA  240
STTSGAASFM LLDSSNPLSN IGTLSPSINQ LHFPNYQSIG PHQLMNPSSP YLPISPNPNF  300
HHDPYSKGIV LDLTNNASSS SSNPIPQFGY SWNYMPKQGG NFNVSQLFSS PNNRVVEERA  360
EDSSKGDQGN NTSNNNKPFM LDDENVSAIA SDPKLIRVAV AAAISTVLIN KETQTSGNGS  420
PRDNTWVLES GNAVQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22159235176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088128.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088128.20.0probable WRKY transcription factor 9
SwissprotQ9C9F01e-71WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A2G9GZ601e-126A0A2G9GZ60_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72872129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.14e-66WRKY DNA-binding protein 9