PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088152.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family M-type_MADS
Protein Properties Length: 235aa    MW: 25538.2 Da    PI: 8.237
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.61e-201663249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    r + +sn  vtfskRr g++KKA+EL++LC+ae+a+++fs+  k++ +
  XP_011088152.1 16 RMSKESNLLVTFSKRRSGLFKKASELCILCGAEIAIVVFSPGKKVFSF 63
                    567889999********************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.6E-28766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.338767IPR002100Transcription factor, MADS-box
CDDcd002657.19E-34879No hitNo description
SuperFamilySSF554555.62E-26881IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-17929IPR002100Transcription factor, MADS-box
PfamPF003191.1E-221763IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MARKSSRGRQ KIEMTRMSKE SNLLVTFSKR RSGLFKKASE LCILCGAEIA IVVFSPGKKV  60
FSFGHPSVES VVERYLAPST PPVAAAPPVT TTAVQLVEAH RSASVRELNV QLHDVLGRLD  120
AERRRGVELS RLRKEGPSGG RWWEAPIKDL SMEELVQLKE AMEDLSKNVS QQAENLMVVE  180
AAAMAAVEPS PFSPPPGFGG GDGSSVVEDR VPGDGLGQLS VTPQGFTLEF DRSFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-16881275MEF2 CHIMERA
6byy_B2e-16881275MEF2 CHIMERA
6byy_C2e-16881275MEF2 CHIMERA
6byy_D2e-16881275MEF2 CHIMERA
6bz1_A2e-16889283MEF2 CHIMERA
6bz1_B2e-16889283MEF2 CHIMERA
6bz1_C2e-16889283MEF2 CHIMERA
6bz1_D2e-16889283MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088152.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088152.11e-170agamous-like MADS-box protein AGL62
TrEMBLA0A068TPM51e-73A0A068TPM5_COFCA; Uncharacterized protein
STRINGSolyc01g106720.1.14e-70(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-54AGAMOUS-like 62