PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011088273.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Protein Properties

Length: 224aa MW: 25421.2 Da PI: 10.0012

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.7	1.4e-15	126	215	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++h + +++ + l de+g++ k+ k++ l++GW++F+ +++L +gD+ vF+l++ ++f +v XP_011088273.1 126 FVKPMLQSHVTGGFWLGLPVQFCKTHL--PSRDVIINLVDEQGEESPTKYLALKTG----LSGGWRGFAIDHELVDGDTAVFQLVEPTTF--KVY 212 89********************995..347899***********666666....*********************9875666..888 PP EE- CS B3 96 vfr 98 ++r XP_011088273.1 213 IIR 215 887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.6E-20	120	216	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.73E-23	120	217	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.68E-24	124	215	No hit	No description
SMART	SM01019	2.0E-21	126	217	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.7E-14	126	216	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.194	126	217	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MVVAKKSAYE ASRQKRLEEN KKRMEELNLN KLAQALRTPS PSPMKKVKPK VPKMPLDPSA 60 IRRSSRVADL PPRSYKEVPI EPMGKPRSYQ RRDLLNRVYA SYEDRQYAIQ RAQELQSGLD 120 QDIPSFVKPM LQSHVTGGFW LGLPVQFCKT HLPSRDVIIN LVDEQGEESP TKYLALKTGL 180 SGGWRGFAID HELVDGDTAV FQLVEPTTFK VYIIRVNEPG ESSN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088273.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088273.1	1e-166	B3 domain-containing protein At3g19184 isoform X1
Swissprot	Q1G3M3	7e-87	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A2G9HCM4	1e-141	A0A2G9HCM4_9LAMI; Uncharacterized protein
STRING	XP_009772546.1	1e-117	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-83	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]