PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011088274.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Protein Properties

Length: 222aa MW: 25161.8 Da PI: 9.9057

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088274.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.7	1.3e-15	124	213	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++h + +++ + l de+g++ k+ k++ l++GW++F+ +++L +gD+ vF+l++ ++f +v XP_011088274.1 124 FVKPMLQSHVTGGFWLGLPVQFCKTHL--PSRDVIINLVDEQGEESPTKYLALKTG----LSGGWRGFAIDHELVDGDTAVFQLVEPTTF--KVY 210 89********************995..347899***********666666....*********************9875666..888 PP EE- CS B3 96 vfr 98 ++r XP_011088274.1 211 IIR 213 887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.73E-23	118	215	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.4E-20	118	214	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.58E-24	122	213	No hit	No description
SMART	SM01019	2.0E-21	124	215	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.194	124	215	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.5E-14	124	214	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MVVAKKSAYE ASRQKRLEEN KKRMEELNLN KLAQALRTPS PSPKVKPKVP KMPLDPSAIR 60 RSSRVADLPP RSYKEVPIEP MGKPRSYQRR DLLNRVYASY EDRQYAIQRA QELQSGLDQD 120 IPSFVKPMLQ SHVTGGFWLG LPVQFCKTHL PSRDVIINLV DEQGEESPTK YLALKTGLSG 180 GWRGFAIDHE LVDGDTAVFQ LVEPTTFKVY IIRVNEPGES SN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088274.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088274.1	1e-164	B3 domain-containing protein At3g19184 isoform X2
Swissprot	Q1G3M3	4e-87	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A2G9HCM4	1e-137	A0A2G9HCM4_9LAMI; Uncharacterized protein
STRING	XP_009772546.1	1e-114	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	8e-85	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]