PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088316.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 229aa    MW: 26186 Da    PI: 10.0505
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088316.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.38.6e-11331061696
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     l++p  f ++  ++ e++   tl+++ g  W+vkl   +  g +++++GW++Fv+ + L + +f++F ++g+++f   v +
  XP_011088316.1  33 LRIPPAFKKQL-LN-EQTDRATLRSPCG-NWDVKL--LQENGDIYFAEGWQDFVRHHSLGSAEFLLFNYNGKMSF--DVVI 106
                     78888886555.33.3445788889888.5*****..8888899**************************99998..4444 PP
2B353.44.8e-171472291198
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++++ l +pk f + h   + + + ++l++++g sW+  +   ++s++  +t+GWk F ++n +k gD+++F+l++  + ++ v++fr
  XP_011088316.1 147 GSRSTLLIPKAFSRIHL-RP-SRQIVILKNLEGISWRASI-LVNSSKHLSITGGWKAFSDDNSIKNGDVCIFELVE--QNTMQVHIFR 229
                     57789*******97774.43.3458***************.67788889************************975..7778999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-1817112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-1917112IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-1319107No hitNo description
SMARTSM010199.0E-621110IPR003340B3 DNA binding domain
PfamPF023622.5E-832104IPR003340B3 DNA binding domain
PROSITE profilePS5086310.91233110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-22128229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-22130229IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-18135229No hitNo description
SMARTSM010193.2E-12136229IPR003340B3 DNA binding domain
PROSITE profilePS5086315.157137229IPR003340B3 DNA binding domain
PfamPF023626.6E-15147229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MMAKEKHQKD GRGNPNTRPC FYKIMWPTNL IHLRIPPAFK KQLLNEQTDR ATLRSPCGNW  60
DVKLLQENGD IYFAEGWQDF VRHHSLGSAE FLLFNYNGKM SFDVVIFGIN GCARNYESAA  120
KSGQESVSSF TSTFPFFRYS IKGYNLGSRS TLLIPKAFSR IHLRPSRQIV ILKNLEGISW  180
RASILVNSSK HLSITGGWKA FSDDNSIKNG DVCIFELVEQ NTMQVHIFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088316.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088316.11e-173B3 domain-containing protein Os11g0197600-like
RefseqXP_020551469.11e-173B3 domain-containing protein Os11g0197600-like
RefseqXP_020551470.11e-173B3 domain-containing protein Os11g0197600-like
RefseqXP_020551471.11e-173B3 domain-containing protein Os11g0197600-like
RefseqXP_020551472.11e-173B3 domain-containing protein Os11g0197600-like
RefseqXP_020551473.11e-173B3 domain-containing protein Os11g0197600-like
TrEMBLA0A2G9GTT73e-94A0A2G9GTT7_9LAMI; Uncharacterized protein
STRINGMigut.B00294.1.p6e-69(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31650.14e-17B3 family protein