PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011088466.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

DBB

Protein Properties

Length: 197aa MW: 21846.2 Da PI: 4.9192

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.7	2.7e-09	4	42	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ + ++e++ fC+ ++ lC++C + H+ H XP_011088466.1 4 QCDVCAKEEASVFCTADEAALCQNCDSRVHNAnklaskH 42 7*****************************655555555 PP
2	zf-B_box	30.2	9e-10	54	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 e + C+ ++e ++ lfC++++ llC++C +H+ Ht XP_011088466.1 54 ESPSCDICQERRALLFCQEDRALLCRECDIPIHRAneHT 92 5789*****************************768876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.224	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.04E-6	3	47	No hit	No description
SMART	SM00336	1.1E-8	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.2E-7	4	43	IPR000315	B-box-type zinc finger
SMART	SM00336	5.6E-15	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.082	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.5E-8	54	93	IPR000315	B-box-type zinc finger
CDD	cd00021	2.26E-9	56	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0080167	Biological Process	response to karrikin
GO:1900458	Biological Process	negative regulation of brassinosteroid mediated signaling pathway
GO:2000306	Biological Process	positive regulation of photomorphogenesis
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MKIQCDVCAK EEASVFCTAD EAALCQNCDS RVHNANKLAS KHPRFSLLNP QFKESPSCDI 60 CQERRALLFC QEDRALLCRE CDIPIHRANE HTKKHNRFLL TGVKLSAAAS SYEAATSSSG 120 SQSETEIKIS VTNEVNCQPA NCSESSSSTW RDNESSQPVS QQASDSTSSI AEYLMETLPG 180 WHVEDLLDPP SQYVFYS

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269\|PubMed:22535582}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088466.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088466.1	1e-144	B-box zinc finger protein 20
Swissprot	Q0IGM7	5e-69	BBX20_ARATH; B-box zinc finger protein 20
TrEMBL	A0A2G9H460	1e-118	A0A2G9H460_9LAMI; Uncharacterized protein
STRING	Migut.B00192.1.p	2e-98	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1463	23	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	6e-65	DBB family protein

Publications ? help Back to Top
Wei CQ, et al. The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis. J Genet Genomics, 2016. 43(9): p. 555-563 [PMID:27523280] Thussagunpanit J, et al. Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin. Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301 [PMID:27858514]