PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088488.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family DBB
Protein Properties Length: 211aa    MW: 23620.6 Da    PI: 6.031
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.93.6e-07433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  +++fC  ++  lC++C ++ H
  XP_011088488.1  4 LCDVCESAAAIIFCAADEAALCRSCDDKVH 33
                    7*************************9998 PP
2zf-B_box26.71.2e-085291237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                    e ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  XP_011088488.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                    789***************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-7147IPR000315B-box-type zinc finger
PROSITE profilePS501199.997147IPR000315B-box-type zinc finger
CDDcd000215.33E-5345No hitNo description
PfamPF006431.2E-5341IPR000315B-box-type zinc finger
PROSITE profilePS501198.9445196IPR000315B-box-type zinc finger
SMARTSM003365.6E-115196IPR000315B-box-type zinc finger
PfamPF006431.8E-65285IPR000315B-box-type zinc finger
CDDcd000211.33E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRTLCDVCES AAAIIFCAAD EAALCRSCDD KVHMCNKLAS RHVRVGLAEP SEVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGS VDEPGSQRVH  120
LGEAKREPIQ MSSLRAKENQ QNHRDSPEPI LGNNIDSHEK MENQLIDLNS RPQRVHGQTP  180
GNQDRLDTLA YNNHESESVV PDGYLKREPE K
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088488.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2396504e-32AC239650.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-23c6 map 1, complete sequence.
GenBankHG9754404e-32HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755134e-32HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088488.11e-156B-box zinc finger protein 19
RefseqXP_020551620.11e-156B-box zinc finger protein 19
RefseqXP_020551621.11e-156B-box zinc finger protein 19
RefseqXP_020551622.11e-156B-box zinc finger protein 19
SwissprotC0SVM59e-82BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2G9G0M31e-122A0A2G9G0M3_9LAMI; Uncharacterized protein
STRINGMigut.B00176.1.p1e-119(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-70DBB family protein