PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088837.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 287aa    MW: 31004.8 Da    PI: 4.3763
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05262284223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+ksF++   L++H +  H
  XP_011088837.1 262 SCKSCSKSFTSENALQSHAKAkH 284
                     7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.74E-5255283No hitNo description
PROSITE profilePS5015711.78261287IPR007087Zinc finger, C2H2
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEFWGVEVKA GQPLKVQPEF GKLIHISQAA LGEVKDVKGA KHVPLRLKVD SKNFIIGALS  60
AEDRAQLMFD LVFERDFELS HDWKNGSVYF MGYVADDPVS DGEEFSDDFE DESEDEPVDA  120
LENGKVKPKS GDVKAAKVAA AKIGNKEEDQ SDSDDDEDDI GSDSDDEMAL DGEDSSDVSG  180
EEDEDDEDDS SEEELPKMQK SKKRAAEQET PVPAKKAKSS TPDKSGNKKG QAGTPFPSKP  240
AGKTPTGNKS KEQTPKSGGQ LSCKSCSKSF TSENALQSHA KAKHGGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088837.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088837.10.0histone deacetylase HDT1 isoform X1
TrEMBLA0A2G9HM671e-95A0A2G9HM67_9LAMI; Histone deacetylase
STRINGMigut.D02332.1.p2e-75(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1113822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.26e-36histone deacetylase 3