PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011088898.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NF-YB

Protein Properties

Length: 157aa MW: 17782 Da PI: 6.0767

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	39.6	1.3e-12	17	109	6	93
NF-YB 6 rflPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 ++lP + v r++k+ l + ++ is +d+ + e + fi ++++ a+d c++ +r+ in++d++ al ++ f +++ pl++ l+++r+ XP_011088898.1 17 EELPKTIVRRVVKEKLSQlatDSEISvlRDSLQAFCESARIFIHYLSATANDICRESNRQIINAEDVFKALEEIEFAEFIGPLRACLEEFRQK 109 5789999999999987651114555533788999999999***************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.6E-28	11	149	IPR009072	Histone-fold
Pfam	PF00808	6.5E-8	18	87	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	3.67E-22	19	131	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MAEKDKELTE KVVPEAEELP KTIVRRVVKE KLSQLATDSE ISVLRDSLQA FCESARIFIH 60 YLSATANDIC RESNRQIINA EDVFKALEEI EFAEFIGPLR ACLEEFRQKN PGRKVASSGS 120 SKAKDTSKNA KRKPPAQSEG RKKRREVESN RDEDDAD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	144	KRKPPAQSEGRKKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088898.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088898.1	1e-109	DNA polymerase epsilon subunit 3
TrEMBL	A0A2G9HT90	1e-80	A0A2G9HT90_9LAMI; Class 2 transcription repressor NC2, beta subunit (Dr1)
STRING	Migut.D02442.1.p	2e-80	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10161	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	1e-38	nuclear factor Y, subunit B11