PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011088915.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 240aa MW: 27519.2 Da PI: 8.2084

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088915.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.7	7.3e-43	6	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 l+pG+rF Pt+eelv++yL++ +++++ +++ +vi+ +diy+++P++Lpk +++++++w+fF++r+ ++ +g r++r+t+sgyWkatg+ XP_011088915.1 6 LQPGVRFYPTEEELVSFYLHNMLQHNNnNKIRRVIPLLDIYQLHPSQLPKhcgeLCRGDTEQWFFFVPRQAREVRGGRPSRTTASGYWKATGSPS 100 579******************99985677788***********645643444777****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++++g+kk++vfy+g+ap g kt+W m+eyr+ XP_011088915.1 101 YVYSSDNKVIGVKKSMVFYQGKAPAGAKTKWKMNEYRA 138 **********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.5E-46	5	161	IPR003441	NAC domain
PROSITE profile	PS51005	44.515	6	162	IPR003441	NAC domain
Pfam	PF02365	1.0E-22	8	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MASEILQPGV RFYPTEEELV SFYLHNMLQH NNNNKIRRVI PLLDIYQLHP SQLPKHCGEL 60 CRGDTEQWFF FVPRQAREVR GGRPSRTTAS GYWKATGSPS YVYSSDNKVI GVKKSMVFYQ 120 GKAPAGAKTK WKMNEYRAIK EDFCTSIPVL RHEVSLCRVY VVSGSFRAFD RRPTHVAANS 180 ISKEVKIVQE NDKITLSTNE IAGMLQERSW YSYSEANHSV ENSSEMINGV EHLMECDEDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-29	6	160	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-29	6	160	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-29	6	160	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-29	6	160	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	3e-29	6	160	20	166	NAC domain-containing protein 19
3swm_B	3e-29	6	160	20	166	NAC domain-containing protein 19
3swm_C	3e-29	6	160	20	166	NAC domain-containing protein 19
3swm_D	3e-29	6	160	20	166	NAC domain-containing protein 19
3swp_A	3e-29	6	160	20	166	NAC domain-containing protein 19
3swp_B	3e-29	6	160	20	166	NAC domain-containing protein 19
3swp_C	3e-29	6	160	20	166	NAC domain-containing protein 19
3swp_D	3e-29	6	160	20	166	NAC domain-containing protein 19
4dul_A	3e-29	6	160	17	163	NAC domain-containing protein 19
4dul_B	3e-29	6	160	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088915.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088915.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	3e-82	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2G9HT77	1e-109	A0A2G9HT77_9LAMI; Uncharacterized protein
STRING	Migut.N02478.1.p	3e-94	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-84	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]