PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011088989.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

YABBY

Protein Properties

Length: 185aa MW: 20505.5 Da PI: 8.7074

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088989.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	222.3	1.4e-68	2	158	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 ++ +se+vCyv+CnfCntilavsvP s+f++vtvrCGhC++llsvn+ q + ++ +l++++ v +e++ ++++ s+ XP_011088989.1 2 SMEMTSERVCYVHCNFCNTILAVSVPCGSMFTIVTVRCGHCANLLSVNMGALLQSVHLQDF-------QLQKQQSVVGEATIRDIGSSSKCSRFG 89 67889***************************************999988887766664.......233333333444333344444445566 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + d+e p++ p irPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl XP_011088989.1 90 PVPQ----VDQEQPKAAP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 158 6655....4556666666.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.9E-73	6	158	IPR006780	YABBY protein
SuperFamily	SSF47095	2.23E-8	99	152	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.6E-5	106	152	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSMEMTSERV CYVHCNFCNT ILAVSVPCGS MFTIVTVRCG HCANLLSVNM GALLQSVHLQ 60 DFQLQKQQSV VGEATIRDIG SSSKCSRFGP VPQVDQEQPK AAPIRPPEKR QRVPSAYNRF 120 IKEEIQRIKA SNPEISHREA FSTAAKNWAH FPHIHFGLKL EGNKQAAKLD HQVAAAEGTE 180 KSLGF

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088989.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088989.1	1e-138	putative axial regulator YABBY 2 isoform X1
Refseq	XP_011088990.1	1e-138	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	2e-78	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A4D8Z9D2	1e-101	A0A4D8Z9D2_SALSN; Uncharacterized protein
STRING	XP_006487832.1	6e-96	(Citrus sinensis)
STRING	VIT_06s0009g00880.t01	6e-96	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	7e-81	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]