PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011089355.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 195aa MW: 21648.3 Da PI: 4.9475

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011089355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.5	2e-42	31	131	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++kll++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+++la XP_011089355.1 31 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTTAHRVFGASNIIKLLQELPEAQRADAVSSMVYEANARLRDPVYGCAGAICQLQNQVNELQQQLA 125 7******************************************************************************************** PP DUF260 96 llkeel 101 ++++++ XP_011089355.1 126 KAQAQI 131 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.238	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-42	31	128	IPR004883	Lateral organ boundaries, LOB
SuperFamily	SSF101082	8.89E-5	107	176	IPR023220	Type IV secretion system, VirB5-domain

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MNMEGNEVAR VSSTQTQSST SSSSAAVVMS PCAACKILRR RCVEKCVLAP YFPPTDPLKF 60 TTAHRVFGAS NIIKLLQELP EAQRADAVSS MVYEANARLR DPVYGCAGAI CQLQNQVNEL 120 QQQLAKAQAQ IANMQTQNAH LMALICDEMA QSSQTLPQHD QQSFDDFNSS PHSYQSNTSF 180 LEENNFELLW EPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	30	157	10	127	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	30	157	10	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011089355.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089355.1	1e-144	LOB domain-containing protein 1
Swissprot	Q9SK08	4e-71	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A2G9GMD1	1e-106	A0A2G9GMD1_9LAMI; Uncharacterized protein
STRING	EOY33105	3e-89	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	2e-56	LOB domain-containing protein 11