PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011089606.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 225aa MW: 25896.4 Da PI: 9.0289

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011089606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	93.2	3.2e-29	57	144	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + k+ +++r++ra tr gCka+++vkkek+ kw+vtk+ +eHnH+l+ XP_011089606.1 57 FYDAYATKMGFIMRVDAFRRSMRDGNVVWRRLVCNKEGFRKCRPKR-SESRKPRAITREGCKAMIVVKKEKTCKWVVTKFFKEHNHPLV 144 9*****************************************99.9*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-27	57	144	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MIVASLSSVD ESQCAGNEAE TIENSHGTEL VVNNEGHSER EPFVGMEFDS EEAAKVFYDA 60 YATKMGFIMR VDAFRRSMRD GNVVWRRLVC NKEGFRKCRP KRSESRKPRA ITREGCKAMI 120 VVKKEKTCKW VVTKFFKEHN HPLVAAPVNT RRSAQLSQTP DEKDVKIREL TAELQRERRR 180 SAALQEQLNS ILEDMEEHSK HLSRNITNIV QSVNEIESRR IVFPS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011089606.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089606.1	1e-167	protein FAR1-RELATED SEQUENCE 12
TrEMBL	A0A2G9G3B5	1e-136	A0A2G9G3B5_9LAMI; Uncharacterized protein
STRING	Migut.N00674.1.p	1e-123	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12791	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-92	FAR1 family protein