PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089823.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 258aa    MW: 29565.4 Da    PI: 7.6081
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-16956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv +v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
   XP_011089823.1  9 KGPWTEQEDVQLVLYVNLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 56
                     79********************************************97 PP
2Myb_DNA-binding568.9e-1862107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
   XP_011089823.1  62 RGKMTPHEERLVLELHSKYGNR-WSRIARKLP-GRTDNEIKNYWRTHM 107
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.175456IPR017930Myb domain
SuperFamilySSF466895.24E-306103IPR009057Homeodomain-like
SMARTSM007175.8E-15858IPR001005SANT/Myb domain
PfamPF002493.3E-15956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-201063IPR009057Homeodomain-like
CDDcd001671.13E-101156No hitNo description
PROSITE profilePS5129425.71357111IPR017930Myb domain
SMARTSM007171.3E-1761109IPR001005SANT/Myb domain
PfamPF002491.9E-1562106IPR001005SANT/Myb domain
CDDcd001671.99E-1264107No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2464109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MMEKEGVRKG PWTEQEDVQL VLYVNLFGDR RWDFIAKVSG LKRTGKSCRL RWVNYLHPGL  60
KRGKMTPHEE RLVLELHSKY GNRWSRIARK LPGRTDNEIK NYWRTHMRKM AQERKKGAAS  120
PSVSASSLSS NSSSSSISNS PTAELISTPA LQAKEHSFYD TGGMELMAAA PGEKKITSSK  180
AEESPKVYSM EDIWEDFEFS QENCNQLMTC QAVASPIWDY CPTDHSLQLW SMDEEESRLP  240
MQPIGDDHFH SFPYYMTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2791094103MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-27910958157MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-27910958157MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-27910927126MYB TRANSFORMING PROTEIN
1mse_C2e-2791094103C-Myb DNA-Binding Domain
1msf_C2e-2791094103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089823.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7800916e-78KR780091.1 Rehmannia glutinosa R2R3-MYB protein (MYB15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089823.10.0transcription factor MYB48 isoform X1
SwissprotQ9LX822e-78MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A059PRS81e-103A0A059PRS8_SALMI; MYB-related transcription factor
STRINGVIT_06s0004g04140.t014e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.16e-78myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]