PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090067.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 473aa    MW: 52647.9 Da    PI: 8.9148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090067.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055103122221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C+ CgksF ++  L  H++
  XP_011090067.1 103 TCKECGKSFHSWKALFGHMK 122
                     6******************7 PP
2zf-C2H212.20.00057407429123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C k+F++   L  H r+H
  XP_011090067.1 407 HECPICFKVFPSGQALGGHKRSH 429
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.974931IPR007087Zinc finger, C2H2
SMARTSM003550.24931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.74E-9931No hitNo description
PfamPF139121.0E-4932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576675.74E-997124No hitNo description
SMARTSM003550.015102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
PfamPF139127.3E-7104124IPR007087Zinc finger, C2H2
SMARTSM003550.091334356IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.536334356IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-6334356No hitNo description
PfamPF139122.7E-10334358IPR007087Zinc finger, C2H2
PROSITE patternPS000280336356IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-6402429No hitNo description
SMARTSM003550.074407429IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-11407430IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974407429IPR007087Zinc finger, C2H2
PROSITE patternPS000280409429IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEKDHDQKHA CKFCNKIFPC GRSLGGHMRS HLINVSSSDH RRIDGKLPKK KLPPLVNGKS  60
SGETDFSVKI GGKFCYGLRE DPIKKTNKSS KSSEEDTLLQ GKTCKECGKS FHSWKALFGH  120
MKCHSVNARS SEEDSWNGSN DQRKPVVDSQ SDNEAATPFY RRKRSDRIKR YTSTTNSSSL  180
SIANHSASVS EIDQQEQEEV ALSLIILSMD KGDWSRVTNS VLESSNNSAK VLEAEKVAKT  240
TNNNSKKLRN GLKTTGEADV SADEFCVDNI LQKNNVDVGC NESEVNSPRN LIKESGLSQF  300
EIDCTKTKSR KRKCTDIHDF DSELCQNFER KSRFSCSICK KAFASYQALG GHRASHKKFN  360
GCCAPRSETS METESSHNQS DNHSKLIKSE SPIGNFADIG SKKNKEHECP ICFKVFPSGQ  420
ALGGHKRSHL TGDQVKTSRC NANQQPIREP WWLGTSHKHE PFLGLLSSYG PAC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090067.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552438.10.0zinc finger protein ZAT4-like, partial
TrEMBLA0A2G9HIF71e-155A0A2G9HIF7_9LAMI; Uncharacterized protein
STRINGEOY220001e-116(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-39C2H2-like zinc finger protein