PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011090087.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

WOX

Protein Properties

Length: 181aa MW: 21025.2 Da PI: 9.8689

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011090087.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.9e-19	5	66	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +++R+++t+eql +L+el+++ +p+a+++++++++l +++ + V++WFqN++a++++ XP_011090087.1 5 KSSRWCPTPEQLMILQELYRRgLTNPNASQIQKITAHLsfygQIQGKSVFYWFQNHKARDRQ 66 679***************99***********************************996 PP
2	Wus_type_Homeobox	111.9	3.4e-36	5	67	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+PtpeQ++iL+ely++Gl +Pn+++iq+ita+L+ yG+i++k VfyWFQN+kaR+rqk XP_011090087.1 5 KSSRWCPTPEQLMILQELYRRGLTNPNASQIQKITAHLSFYGQIQGKSVFYWFQNHKARDRQK 67 689***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.22	2	67	IPR001356	Homeobox domain
SMART	SM00389	1.7E-5	4	71	IPR001356	Homeobox domain
CDD	cd00086	2.25E-4	5	67	No hit	No description
Pfam	PF00046	6.3E-17	5	66	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.41E-11	6	67	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-6	7	66	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MSPPKSSRWC PTPEQLMILQ ELYRRGLTNP NASQIQKITA HLSFYGQIQG KSVFYWFQNH 60 KARDRQKLRK KLAHQLLQQH VLLGLYQHNH QHNLSGFTHH LSSSRCTARN LYPQGGGGCE 120 EAPAVVMNHH RSKDCVMRMY GDDVTMMIMD VDPNFPCCRN KRLETLELFP LRSPAVKDQE 180 R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011090087.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090087.1	1e-136	WUSCHEL-related homeobox 3
TrEMBL	A0A1Q3BTT3	8e-49	A0A1Q3BTT3_CEPFO; Homeobox domain-containing protein
STRING	XP_010253422.1	3e-49	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2959	19	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	6e-34	WOX family protein