PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011090094.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 190aa MW: 20929.8 Da PI: 5.6779

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011090094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.3	2.3e-42	30	129	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+++la XP_011090094.1 30 PCAACKILRRRCVEKCVLAPYFPPNDPLKFTTAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVSELQEQLA 124 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_011090094.1 125 KARAE 129 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.247	29	130	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-42	30	127	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MEGSDTTITT VTSPSSSVSP PPQSHVVISP CAACKILRRR CVEKCVLAPY FPPNDPLKFT 60 TAHRVFGASN IIKFLQELPE PQRADAVSSM VYEANARLRD PVYGCAGAIC QLQKQVSELQ 120 EQLAKARAEL VNVQCQNANL MALICMEMAQ PNDHQSSLDA FGTSPRTYQS NANFLDENNT 180 GLVWEQLLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	29	135	10	116	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	29	135	10	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011090094.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090094.1	1e-141	LOB domain-containing protein 1
Swissprot	Q9LQR0	9e-69	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2G9GMD1	4e-99	A0A2G9GMD1_9LAMI; Uncharacterized protein
STRING	VIT_06s0004g03350.t01	1e-88	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-67	LOB domain-containing protein 1