PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090153.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 273aa    MW: 30630.3 Da    PI: 7.0106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090153.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08155202455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN+++  L++++P +     k +  a +L + ++Y++sLq
  XP_011090153.1 155 SHSLAERVRREKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 202
                     8*************************9....35599999**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16149219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-10149206No hitNo description
Gene3DG3DSA:4.10.280.102.6E-16151212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.605151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-6155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-9157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MADLFLPALD NLKHSFSSSE ADPNIEFTTH FSDINLSHQH LSGSDIHSLM GFPLDNLFPH  60
QFPGNSDRFP GLFIQEVPPL TEQVISNDND RVDRKRKAME ISSPGNSSAQ GSDNGIGRKN  120
SCRRGKKVKN SDQNKEEKPR EVVHVRAKRG QATDSHSLAE RVRREKINER LRCLQDIVPG  180
CYKTMGMAVM LDEIINYVQS LQNQVEFLSM KLAAASTFYD FNSDRDALET MQRAKAFEAL  240
KTQNGGSPGI PSAHQFAPLD LNFGCYFQPS DNR
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090153.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090153.10.0transcription factor BEE 1 isoform X1
SwissprotQ8GWK79e-61BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A2G9G9V77e-99A0A2G9G9V7_9LAMI; Uncharacterized protein
STRINGMigut.D00641.1.p1e-93(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39712344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.14e-63BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]